Gather estimated expression data for analysis

Source: R/gather_estimated_expression.R

After estimating expression locally or in parallel gather_estimated_expression parses files of the form

gather_estimated_expression(results_dir, verbose = TRUE)

Arguments

results_dir

path used in e.g. estimate_expression(...)
verbose

(default: true)

Value

a data.frame with columns (see RSEM for interpretation) run_accession gene_id transcript_ids length effective_length expected_count TPM FPKM and one row per (run_accession, gene_id)

Details

<results_dir>/<run_accession>.genes.results