Evaluate network Guilt By Association and report AUROC scores

Source: R/network_gba.R

Evaluate network Guilt By Association and report AUROC scores

network_gba(
  genes,
  annotation_sets,
  networks,
  min = 20,
  max = 1000,
  nfold = 3,
  degrees = 1:length(networks),
  verbose = FALSE
)

Arguments

genes

list of genes
annotation_sets

list of go term annotations to predict
networks

list of networks used for prediction
min

filter terms requiring a minimum number of annotations (Default: 20)
max

filter terms requiring a maximum number of annotations (Default: 1000)
nfold

(Default 3)
degrees

(Default 1:length(networks))
verbose

(Default FALSE)

Value

data.frame with columns anno_id auroc_mean auroc_std degree_null_auroc_mean degree_null_auroc_std