Retrieve SRA runs from the SRAmeta database
retrieve_sra_runs(sra_con, curated_studies, verbose = TRUE)
| sra_con | a DBI connection to the SRA database. E.g. the result of calling get_sra_connection() |
|---|---|
| curated_studies | a character vector with study_accession values or a data.frame with a column study_accession |
| verbose | (default: TRUE) |
data.frame with one run per row with columns in curated_studies an additionally:
study_alias study_title experiment_accession sample_accession library_strategy library_layout sample_alias taxon_id scientific_name common_name run_accession run_alias